Description: Includepaths
--- a/Makefile
+++ b/Makefile
@@ -1,8 +1,6 @@
 #---Begin configuration---#
 #---Begin configuration---#
 
-prefix=/usr/local
-
 #----End configuration----#
 #----End configuration----#
 
@@ -29,7 +27,7 @@
 
 # Compilation settings
 CC=gcc
-CFLAGS=-Wall -DAGN_DATA_PATH='"$(prefix)/share/aegean"' -Wno-unused-result
+CFLAGS += -Wall -DAGN_DATA_PATH='"$(prefix)/share/aegean"' -Wno-unused-result
 GTFLAGS=prefix=$(prefix)
 ifeq ($(cairo),no)
   CFLAGS += -DWITHOUT_CAIRO
@@ -57,6 +55,7 @@
 INCS=$(shell pkg-config --silence-errors --cflags-only-I cairo) \
      -I inc/core \
      -I /usr/local/include/genometools \
+     -I /usr/include/genometools \
      -I $(prefix)/include/genometools
 ifeq ($(memcheck),yes)
   MEMCHECK=valgrind --leak-check=full --show-reachable=yes --error-exitcode=1 \
@@ -91,7 +90,7 @@
 		rm $(prefix)/lib/libaegean.a
 
 clean:		
-		rm -rf $(BINS) libaegean.a $(AGN_OBJS) inc/core/AgnVersion.h bin/*.dSYM
+		rm -rf README $(BINS) libaegean.a $(AGN_OBJS) inc/core/AgnVersion.h bin/*.dSYM
 
 $(AGN_OBJS):	obj/%.o : src/core/%.c inc/core/%.h inc/core/AgnVersion.h
 		@- mkdir -p obj
