#/******************************************************************************
# *                    Makefile for melting v4.0                               *
# * This program   computes for a nucleotide probe, the enthalpy, the entropy  *
# * and the melting temperature of the binding to its complementary template.  *
# * Three types of hybridisation are possible: DNA\DNA, DNA\RNA, and RNA\RNA.  *
# *                 Copyright (C) Nicolas Le Novre 1997-2000                  *
# ******************************************************************************/
# 
#/*    This program is free software; you can redistribute it and/or modify
#      it under the terms of the GNU General Public License as published by
#      the Free Software Foundation; either version 2 of the License, or
#      (at your option) any later version.
#
#      This program is distributed in the hope that it will be useful,
#      but WITHOUT ANY WARRANTY; without even the implied warranty of
#      MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#      GNU General Public License for more details.
#
#      You should have received a copy of the GNU General Public License
#      along with this program; if not, write to the Free Software
#      Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307 USA
#
#      Nicolas Le Novre 
#      Department of Zoology, University of Cambridge, Downing street
#      CB2 3EJ Cambridge, UK. e-mail: nl223@cus.cam.ac.uk
#*/
 

# Edit the following line to precise where to find the files containing 
# the sets of nearest_neighbor parameters. DO NOT FORGET THE LAST SEPARATOR!
NN_DIR=\"/usr/local/share/MELTING4/NNFILES/\"

# For DOS and colleagues (progra~1 means "Program Files". Check that you have no directory "progra" followed by something alphabetically inferior) 
# NN_DIR = "c:/progra~1/melting4/nnfiles/"

# Here add your compiler name and the chosen options
CC = gcc
# options to produce the release version
CFLAGS = -Wall -pedantic -O3 -DNN_BASE=$(NN_DIR)
# options to produce a version to debug and prof
#CFLAGS = -Wall -pedantic -g -DNN_BASE=$(NN_DIR)

OBJECTS = melting.o decode.o calcul.o

melting : $(OBJECTS)
	$(CC) $(CFLAGS) -o melting $(OBJECTS) -lm

$(OBJECTS) : common.h
melting.o : melting.h
decode.o : decode.h
calcul.o : calcul.h

clean :
	rm $(OBJECTS)
