qiime (1.5.0-1) unstable; urgency=low

  * New upstream version (adapted patches + remove patch that was applied
    upstream)
  * debian/get-orig-source: Strip *.jar file from upstream source which
    should never have been there
  * debian/upstream:
     - more complete authors information in BibTeX conform format
     - Moved DOI+PMID to References
  * debian/qiime.links: Link to king.jar
  * debian/control: Depends: king
  * debhelper 9 (control+compat)

 -- Andreas Tille <tille@debian.org>  Tue, 08 May 2012 18:07:56 +0200

qiime (1.4.0-2) unstable; urgency=low

  * debian/qiime.install: Include *.py files
    Closes: #668999

 -- Andreas Tille <tille@debian.org>  Mon, 16 Apr 2012 15:39:02 +0200

qiime (1.4.0-1) unstable; urgency=low

  * New upstream version (updated patches)
  * debian/patches/fix_shebang_lines.patch: Removed because file
    to patch was removed upstream
  * debian/copyright: rewritten to confirm DEP5 and verified using
      cme fix dpkg-copyright

 -- Andreas Tille <tille@debian.org>  Tue, 20 Mar 2012 14:41:20 +0100

qiime (1.3.0-3) unstable; urgency=low

  [ Charles Plessy ]
  * renamed debian/upstream-metadata.yaml to debian/upstream

  [ Andreas Tille ]
  * Standards-Version: 3.9.3 (no changes needed)
  * debian/patches/ghc_7.4.2_compatibility.patch: Fix build problem based
    on illegal use of 'import System' (Thanks to Joachim Breitner
    <nomeata@debian.org>) for the patch
    Closes: #663889

 -- Andreas Tille <tille@debian.org>  Sat, 17 Mar 2012 19:19:38 +0100

qiime (1.3.0-2) unstable; urgency=low

  * debian/control:
    - Added myself to uploaders
    - moved from contrib/science to science because there are
      no non-free components used any more
    - Removed duplicated entry ${misc:Depends}
    - Extra package qiime-doc arch all to avoid
    - Provides/Replaces/Conflicts denoiser
    - Fix Vcs fields
    - DM-Upload-Allowed: yes
    - Build-Depends:
       + python-all-dev (>= 2.6) (instead of python-central)
       + python-sphinx to create python documentation
  * debian/rules:
    - short dh notation instead of cdbs
      Closes: #639389
    - allow overriding python2 by environemnt which helps backporters
      like Tim for BioLinux
    - use calculated $(pkg) variable instead of fixed string 'qiime'
  * debian/{rules,qiime.install}: Adapted to new binary package layout
  * debian/qiime.{doc,links}: Move documentation into place and use
    packaged JavaScript libraries
  * debian/qiime-doc.doc-base
  * debian/upstream-metadata.yaml

 -- Andreas Tille <tille@debian.org>  Tue, 29 Nov 2011 09:23:18 +0100

qiime (1.3.0-0ubuntu6) lucid; urgency=low

  * Attempt to fix some errors reported by print_qiime_config -t
    Fixes to environment, configuration and small patches 

 -- Tim Booth <tbooth@ceh.ac.uk>  Wed, 02 Nov 2011 18:06:37 +0000

qiime (1.3.0-1) unstable; urgency=low

  * Bringing qiime to Debian
  [Steffen]
  * Some reformatting of debian/control

 -- Tim Booth <tbooth@ceh.ac.uk>  Fri, 26 Aug 2011 17:48:30 +0200

qiime (1.3.0-0ubuntu5) lucid; urgency=low

  * Very minor fix to scripts/shell/qiime_environment

 -- Tim Booth <tbooth@ceh.ac.uk>  Tue, 16 Aug 2011 12:35:06 +0100

qiime (1.3.0-0ubuntu4) lucid; urgency=low

  * New upstream release.  Needs newer Python-Cogent
    and includes built-in denoiser, so I have now aliased
    denoiser to run the qiime wrapper.
  * As the upstream now contains a tiny compiled package I've had
    to make it arch dependent (support_files/denoiser/FlowgramAlignment
    code written in Haskell).
  * Added build dep on ghc6 for the same reson

 -- Tim Booth <tbooth@ceh.ac.uk>  Tue, 19 Jul 2011 17:38:28 +0100

qiime (1.2.1-ubuntu5) lucid; urgency=low

  * Fixed silly error in qiime wrapper script
  * Added uclust wrapper to deal with uclust being expected but missing

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 24 Mar 2011 16:52:43 +0000

qiime (1.2.1-ubuntu4) lucid; urgency=low

  * Fixed dependency - needs python-cogent >= 1.5

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 24 Mar 2011 15:33:03 +0000

qiime (1.2.1-ubuntu3) lucid; urgency=low

  * Moved .py scripts out of /usr/bin
  * Added /usr/bin/qiime wrapper script as per Bio-Linux
  * Added default configuration file
  * Cleaned up documentation
  * Added many dependencies (some of which are still not packaged) 

 -- Tim Booth <tbooth@ceh.ac.uk>  Thu, 24 Mar 2011 11:35:58 +0000

qiime (1.2.1-ubuntu2) lucid; urgency=low

  * Pulled 1.2.1 source and tried a rebuild.
  * Fixed Lintian changelog warning.

 -- Tim Booth <tbooth@ceh.ac.uk>  Tue, 22 Mar 2011 13:55:49 +0000

qiime (1.2.1-2) experimental; urgency=low

  * Initial release (Closes: #587275)
  * Fixed Python 2.6 incompatibility.

 -- Steffen Moeller <moeller@debian.org>  Wed, 02 Mar 2011 22:33:45 +0100

qiime (1.2.1-1) experimental; urgency=low

  * Corrected home page
  * Updated policy to 3.9.1
  * Updated debian/README.Debian

 -- Steffen Moeller <moeller@debian.org>  Wed, 02 Mar 2011 18:19:39 +0100

qiime (1.1.0-1) experimental; urgency=low

  * Initial release.

 -- Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de>  Tue, 20 Jul 2010 00:03:02 +0200

